Restoring native ecosystems in urban Auckland: urban soils, isolation, and weeds as impediments to forest establishment

New Zealand urban environments are currently dominated by exotic plant species. Restoring native vegetation and its associated native biodiversity in these landscapes is desirable for both cultural and ecological reasons. We report on the first four years of an ongoing vegetation restoration experiment in Waitakere City, Auckland, that addresses four challenges to urban restoration: weeds, Anthropic Soils, attraction of frugivorous birds, and patch isolation. Nine commonly planted native species, grouped separately into wind- and bird-dispersed species, were planted across four sites increasingly isolated from native bush patches, using two site preparation methods. By year three, woody weeds >50 cm tall had established with an average density of 1.7 plant m across all sites. This was more than 17 times denser than all established wild native woody seedlings of any height. One of our establishment methods, sparse planting with mulch, resulted in higher native plant survival and faster plant growth. However, after 4 years, the more intensive method, dense planting and ripping of the soil, resulted in a denser canopy and a 2.8-fold reduction in woody weed establishment. The typically urban soils of all sites were highly modified, with substantial variation in compaction, ponding risk, and fertility over distances of 5-15 m. Several, but not all, species were detrimentally affected by soil compaction and ponding. Many bird-dispersed species, both native and non-native, colonised the experiment, although this did not differ between plots with planted wind-dispersed and bird-dispersed species, perhaps due to the small size of these plots. Site colonisation by native species was particularly high at sites ≤ 100 m from existing native vegetation, suggesting that even small patches of native vegetation in urban landscapes will be valuable as seed sources for accelerating native plant establishment at nearby receptive sites © New Zealand Ecological Society

Autotuning Algorithmic Choice for Input Sensitivity

Empirical autotuning is increasingly being used in many domains to achieve optimized performance in a variety of different execution environments. A daunting challenge faced by such autotuners is input sensitivity, where the best autotuned configuration may vary with different input sets. In this paper, we propose a two level solution that: first, clusters to find input sets that are similar in input feature space; then, uses an evolutionary autotuner to build an optimized program for each of these clusters; and, finally, builds an adaptive overhead aware classifier which assigns each input to a specific input optimized program. Our approach addresses the complex trade-off between using expensive features, to accurately characterize an input, and cheaper features, which can be computed with less overhead. Experimental results show that by adapting to different inputs one can obtain up to a 3x speedup over using a single configuration for all inputs

Multi-particle decoherence free subspaces in extended systems

We develop a method to determine spatial configurations to realize decoherence-free subspaces for spatially extended multi-particle systems. We have assumed normal reservoir behavior including translational invariance of the reservoir and preparation in stationary states or mixture thereof and weak Markovian system-reservoir coupling that requires energy transfer. One important outcome of our method is a proof that there does not exist a multi-particle decoherence-free subspace in such systems except in the limit that the spatial extent of the system becomes infinitesimal

Electronic structure of superposition states in flux qubits

Flux qubits, small superconducting loops interrupted by Josephson junctions, are successful realizations of quantum coherence for macroscopic variables. Superconductivity in these loops is carried by $\sim 10^6$ -- $10^{10}$ electrons, which has been interpreted as suggesting that coherent superpositions of such current states are macroscopic superpositions analogous to Schr\"odinger's cat. We provide a full microscopic analysis of such qubits, from which the macroscopic quantum description can be derived. This reveals that the number of microscopic constituents participating in superposition states for experimentally accessible flux qubits is surprisingly but not trivially small. The combination of this relatively small size with large differences between macroscopic observables in the two branches is seen to result from the Fermi statistics of the electrons and the large disparity between the values of superfluid and Fermi velocity in these systems.Comment: Minor cosmetic changes. Published version

Crustal distribution in the central Gulf of Mexico from an integrated geophysical analysis

This study addresses the question of the crustal composition in the central part of the northern Gulf of Mexico (GOM) – the region of the major disagreement between published tectonic models. The location of the Ocean-Continental Boundary (OCB) for different tectonic models varies within 140 km (87 mi) in the study area. I have developed a 2D model integrating the seismic reflection and refraction data with potential fields (gravity and magnetics) along the profile through the debated region. Two alternative OCB locations were tested. The preferred model suggests the OCB position near the Sigsbee Escarpment, which is in agreement with the result of Eddy, 2014 and with the findings of the LithoSPAN experiment (Makris et al, 2015). However, the model with an alternative OCB location (further to the north of the Sigsbee Escarpment) may also satisfy the observed gravity and magnetic fields, although the crust in the oceanic domain is thicker than normal. Since the potential fields do not offer the unique answer, the other geophysical data should be examined, such as the Vp/Vs ratio. This parameter was analyzed for the LithoSPAN (Makris et al., 2015) and allowed distinguishing between continental and oceanic domains; it was also examined for GUMBO 3 and 4 (Duncan, 2013). However, the values of Vs derived during retraction experiment for GUMBO 2 are not publically available at this time

LINVIEW: Incremental View Maintenance for Complex Analytical Queries

Many analytics tasks and machine learning problems can be naturally expressed by iterative linear algebra programs. In this paper, we study the incremental view maintenance problem for such complex analytical queries. We develop a framework, called LINVIEW, for capturing deltas of linear algebra programs and understanding their computational cost. Linear algebra operations tend to cause an avalanche effect where even very local changes to the input matrices spread out and infect all of the intermediate results and the final view, causing incremental view maintenance to lose its performance benefit over re-evaluation. We develop techniques based on matrix factorizations to contain such epidemics of change. As a consequence, our techniques make incremental view maintenance of linear algebra practical and usually substantially cheaper than re-evaluation. We show, both analytically and experimentally, the usefulness of these techniques when applied to standard analytics tasks. Our evaluation demonstrates the efficiency of LINVIEW in generating parallel incremental programs that outperform re-evaluation techniques by more than an order of magnitude.Comment: 14 pages, SIGMO

Loop condensation in the triangular lattice quantum dimer model

We study the mechanism of loop condensation in the quantum dimer model on the triangular lattice. The triangular lattice quantum dimer model displays a topologically ordered quantum liquid phase in addition to conventionally ordered phases with broken symmetry. In the context of systems with extended loop-like degrees of freedom, the formation of such topological order can be described in terms of loop condensation. Using Monte Carlo calculations with local and directed-loop updates, we compute geometric properties of the transition graph loop distributions of several triangular lattice quantum dimer wavefunctions that display dimer-liquid to dimer-crystal transitions and characterize these in terms of loop condensation.Comment: 22 pages, 12 figures, fixed references and minor typo

Finite temperature quantum simulation of stabilizer Hamiltonians

We present a scheme for robust finite temperature quantum simulation of stabilizer Hamiltonians. The scheme is designed for realization in a physical system consisting of a finite set of neutral atoms trapped in an addressable optical lattice that are controllable via 1- and 2-body operations together with dissipative 1-body operations such as optical pumping. We show that these minimal physical constraints suffice for design of a quantum simulation scheme for any stabilizer Hamiltonian at either finite or zero temperature. We demonstrate the approach with application to the abelian and non-abelian toric codes.Comment: 13 pages, 2 figure

Scalability of quantum computation with addressable optical lattices

We make a detailed analysis of error mechanisms, gate fidelity, and scalability of proposals for quantum computation with neutral atoms in addressable (large lattice constant) optical lattices. We have identified possible limits to the size of quantum computations, arising in 3D optical lattices from current limitations on the ability to perform single qubit gates in parallel and in 2D lattices from constraints on laser power. Our results suggest that 3D arrays as large as 100 x 100 x 100 sites (i.e., $\sim 10^6$ qubits) may be achievable, provided two-qubit gates can be performed with sufficiently high precision and degree of parallelizability. Parallelizability of long range interaction-based two-qubit gates is qualitatively compared to that of collisional gates. Different methods of performing single qubit gates are compared, and a lower bound of $1 \times 10^{-5}$ is determined on the error rate for the error mechanisms affecting $^{133}$Cs in a blue-detuned lattice with Raman transition-based single qubit gates, given reasonable limits on experimental parameters.Comment: 17 pages, 5 figures. Accepted for publication in Physical Review

Entangling flux qubits with a bipolar dynamic inductance

We propose a scheme to implement variable coupling between two flux qubits using the screening current response of a dc Superconducting QUantum Interference Device (SQUID). The coupling strength is adjusted by the current bias applied to the SQUID and can be varied continuously from positive to negative values, allowing cancellation of the direct mutual inductance between the qubits. We show that this variable coupling scheme permits efficient realization of universal quantum logic. The same SQUID can be used to determine the flux states of the qubits.Comment: 4 pages, 4 figure